Example Notebooks
=====================

Basic SPARCSpy Project
----------------------

This notebook demonstrates the basic functionality of SPARCSpy. It shows you how to initialize a SPARCSpy project, load input images, segment, extract and classify the provided data and how to generate cutting instructions for excision on a leica LMD7 microscope.

.. toctree::
   :maxdepth: 2

   notebooks/example_sparcspy_project.ipynb

Timecourse SPARCSpy Project
---------------------------

This notebook demonstrates how to use SPARCSpy to analyze a timecourse experiment. It shows you how to initialize a SPARCSpy project, load input images, segment, extract and classify the provided data and how to generate cutting instructions for excision on a leica LMD7 microscope.

.. toctree::
   :maxdepth: 2

   notebooks/Example_Notebook_TimeCourse_Project.ipynb

Segmentation Workflows
----------------------

This notebook walks you through the currently implemented segmentation workflows.

.. toctree::
   :maxdepth: 2

   notebooks/example_notebook_segmentation_workflows.ipynb