sparcstools

Modules:

  • Modules
    • parse
    • stitch
    • image processing

Tutorials:

  • 1. Tutorials
    • 1.1. Parsing and Stitching Data from Opera Phenix
      • 1.1.1. Generated output
      • 1.1.2. Example Results

Example Notebooks:

  • 1. Example Stitching Notebook
    • 1.1. Visualize Stitching Output
sparcstools
  • Index

Index

D | G | M | P | S

D

  • downsample_folder() (in module sparcstools.image_processing)
  • downsample_folder_copy_images() (in module sparcstools.image_processing)
  • downsample_img() (in module sparcstools.image_processing)

G

  • generate_stitched() (in module sparcstools.stitch)
  • generate_thumbnail() (in module sparcstools.stitch)

M

  • module
    • sparcstools.image_processing
    • sparcstools.parse
    • sparcstools.stitch

P

  • parse_phenix() (in module sparcstools.parse)
  • parse_phenix_40X_slide() (in module sparcstools.parse)
  • prepare_stitch_slurm_job() (in module sparcstools.stitch)

S

  • sort_timepoints() (in module sparcstools.parse)
  • sort_wells() (in module sparcstools.parse)
  • sparcstools.image_processing
    • module
  • sparcstools.parse
    • module
  • sparcstools.stitch
    • module

© Copyright 2023, Sophia Maedler.

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