Tutorials#
Learn about how to use alphapepttools with the following tutorials.
End-to-end workflows#
These notebooks analyse a dataset end-to-end and provide a full overview
Functional steps#
These notebooks center around a specific analysis step or functionality of the package
- Introduction to proteomics data analysis with
anndata - Example
alphapepttoolsworkflow with proteomics data - Scientific visualizations with
alphapepttools - Principal component analysis
- Volcanoplot
- Basic volcanoplot
- Advanced layering in a volcanoplot
- TMT data normalization
- Scalability of anndata x alphapepttools
- Filtering by metadata