Tutorials#
Learn about how to use alphapepttools with the following tutorials.
- Introduction to proteomics data analysis with
anndata - Example
alphapepttoolsworkflow with proteomics data - Scientific visualizations with
alphapepttools - Example
alphapepttoolsworkflow with proteomics data - Basic alphapepttools workflow
- Example of PELSA differential expression with
alphapepttools - Batch correction (Reanalysis of Stadler et al, 2025)
- Tutorial: Reading PSM tables into AnnData format
- Plotting