tools
- parsing
- stitching
- ml
- datasets
HDF5SingleCellDataset
HDF5SingleCellDataset.dir_labels
HDF5SingleCellDataset.dir_list
HDF5SingleCellDataset.index_list
HDF5SingleCellDataset.transform
HDF5SingleCellDataset.max_level
HDF5SingleCellDataset.return_id
HDF5SingleCellDataset.return_fake_id
HDF5SingleCellDataset.select_channel
HDF5SingleCellDataset.add_hdf_to_index()
HDF5SingleCellDataset.scan_directory()
HDF5SingleCellDataset.stats()
HDF5SingleCellDataset.len()
HDF5SingleCellDataset.getitem()
HDF5SingleCellDataset.stats()
HDF5SingleCellDatasetRegression
HDF5SingleCellDatasetRegressionSubset
- metrics
- models
- plmodels
MultilabelSupervisedModel
MultilabelSupervisedModel.network
MultilabelSupervisedModel.train_metrics
MultilabelSupervisedModel.val_metrics
MultilabelSupervisedModel.test_metrics
MultilabelSupervisedModel.forward()
MultilabelSupervisedModel.configure_optimizers()
MultilabelSupervisedModel.on_train_epoch_end()
MultilabelSupervisedModel.on_validation_epoch_end()
MultilabelSupervisedModel.confusion_plot()
MultilabelSupervisedModel.training_step()
MultilabelSupervisedModel.validation_step()
MultilabelSupervisedModel.test_step()
MultilabelSupervisedModel.test_epoch_end()
MultilabelSupervisedModel.forward()
MultilabelSupervisedModel.configure_optimizers()
MultilabelSupervisedModel.training_step()
MultilabelSupervisedModel.validation_step()
MultilabelSupervisedModel.test_step()
- pretrained_models
- transforms
- utils
- datasets