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Ecosystem
Installation
Workflow
Package Design
scPortrait Projects
Config Files
SpatialData
Segmentation
Single-cell image datasets
Featurization Methods
Tutorials
A Walk Through The scPortrait Ecosystem
Different segmentation workflows
Fine Tuning single-cell image extraction
Deep learning with scPortrait
Single-cell image mosaic
Automatically parse image files from Opera Phenix imaging experiments
Stitch individual tif files into whole-slide images
Code Examples
Code Snippets
Example Projects
Sharded Cellpose Segmentation
Sharded Cellpose Segmentation on human protein atlas images
Extracting single-cell morphology and subcellular protein localisation from Xenium data
Module API
pipeline
project
segmentation
segmentation workflows
extraction
Featurization
selection
processing
plotting
scportrait.plotting.add_scalebar
scportrait.plotting.colorize
scportrait.plotting.generate_composite
art
io
tools
parse
stitch
ml
h5sc
sdata
.rst
.pdf
Contents
Contents
