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Ecosystem
Installation
Workflow
Package Design
scPortrait Projects
Config Files
SpatialData
Segmentation
Single-cell image datasets
Featurization Methods
Tutorials
A Walk Through The scPortrait Ecosystem
Different segmentation workflows
Fine Tuning single-cell image extraction
Deep learning with scPortrait
Automatically parse image files from Opera Phenix imaging experiments
Stitch individual tif files into whole-slide images
Code Examples
Code Snippets
Example Projects
Sharded Cellpose Segmentation
Sharded Cellpose Segmentation on human protein atlas images
Module API
pipeline
project
segmentation
segmentation workflows
extraction
Featurization
selection
processing
plotting
scportrait.plotting.add_scalebar
scportrait.plotting.colorize
scportrait.plotting.generate_composite
io
tools
parse
stitch
ml
h5sc
sdata
.rst
.pdf
Contents
Contents
