Quickstart

This section will give you a brief overview of the scPortrait ecosystem, introduce you to our computational workflow and walk you through an example project. For more detailled information please see the section describing the complete computational workflow.

• Installation
• scPortrait workflow
  • Stitching
  • Segmentation
  • Extraction
  • Featurization
  • Selection
• A walk through the scPortrait Ecosystem
  • Import Required Libraries
  • Generate the Project Structure
  • Load Imaging Data
  • Generating a Segmentation
  • Extracting single-cell images
  • Classification of extracted single-cells
  • Exporting Cutting contours for excision on the LMD7