scPortrait Ecosystem

Quickstart
scPortrait Workflow
Example Notebooks

scPortrait tools

parsing
stitching
- Example Stitching Notebook

Module API

Module Documentation
- pipeline
- processing
  - images
  - masks
- processing
  - images
  - masks
- tools
  - parsing
  - stitching
  - ml
    - datasets
    - metrics
    - models
    - plmodels
    - pretrained_models
    - transforms
    - utils

scPortrait

Join us on GitHub

scPortrait Workflow
spatialdata
View page source

spatialdata

scPortrait uses spatialdata to save intermediate results.

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