Generate RGB composite single-cell images

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import matplotlib.pyplot as plt

from scportrait.data._single_cell_images import dataset2_h5sc
from scportrait.pl.vis import generate_composite

# select images you want to plot and colorize
h5sc = dataset2_h5sc()
images = h5sc.obsm["single_cell_images"][:, 2:5][[0, 2, 5]]

for _i, img in enumerate(images):
    plt.figure()
    plt.imshow(generate_composite(img))
    plt.axis("off")