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Ecosystem

Installation
Introduction
Workflow
Tutorials
- A Walk Through The scPortrait Ecosystem
- Different segmentation workflows

Tools

Parsing
- Example Notebook to parse and rename files from experiments imaged on an Opera Phenix microscope
Stitching
- Example Stitching Notebook

Code Examples

Code Snippets

Module API

pipeline
processing
io
tools
- parse
- stitch
- ml

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By Sophia Mädler and Niklas Schmacke

© Copyright 2024 Sophia Mädler and Niklas Schmacke.